PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000851695
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 281aa    MW: 29713.7 Da    PI: 8.5966
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000851695genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.52e-3736164299
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                    a kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  +++ ss+         
  MDP0000851695  36 ALKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGHTSSSapssdhkpq 130
                    679*************************************************************99999777.44444444444444445555678 PP

            TCP  89 .............................kaaksaakskk 99 
                                                 +      ++++
  MDP0000851695 131 llgptpfilgkrvrgplddhdnnhnhdasA------TKNP 164
                    888888888877665555544433211110......1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3442168IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2094296IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSNSEDPNNE LTNGGGGGGA MVEQTSQRPS SNGVLALKKP PSKDRHSKVD GRGRRIRMPI  60
ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGHTSS  120
SAPSSDHKPQ LLGPTPFILG KRVRGPLDDH DNNHNHDASA TKNPSDHHAN NDGAVSVVGH  180
SMASMLGPTA GGPGGFWAPH FGQVWSFAAT PPPELMDQSA VSHQQQQQHH QQQHSLFLQQ  240
QTMGEASAAR VGNYLPGHLN LLASLSGGHG NSGQREDDRR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.242340.0bud| fruit| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407986e-75AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047766e-75AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149586e-75AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126106e-75CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359974.11e-175PREDICTED: transcription factor TCP7
SwissprotQ9FMX23e-85TCP7_ARATH; Transcription factor TCP7
TrEMBLD9ZJD51e-165D9ZJD5_MALDO; TCP domain class transcription factor
STRINGGLYMA10G43190.18e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.17e-69TCP family protein